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Fundamental Algorithms in BioinformaticsEpisode from the podcastFundamental Algorithms in Bioinformatics
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Lecture 24: Hidden Markov models and the Vitterbi algorithm

Lecture 24: Hidden Markov models and the Vitterbi algorithm

Released Monday, 25th January 2010
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Lecture 24: Hidden Markov models and the Vitterbi algorithm

Lecture 24: Hidden Markov models and the Vitterbi algorithm

Lecture 24: Hidden Markov models and the Vitterbi algorithm

Lecture 24: Hidden Markov models and the Vitterbi algorithm

Monday, 25th January 2010
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Finish the discussion of HMMs for CpG islands. Introductionto the Vitterbi algorithm (really dynamic programming)to find the most likely Markov Chain generating a givensequence.

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Fundamental Algorithms in Bioinformatics

This course covers fundamental algorithms for efficient analysis of biological sequences and for building evolutionary trees. This is an undergraduate course focusing on the ideas and concepts behind the most central algorithms in biological sequence analysis. Dynamic Programming, Alignment, Hidden Markov Models, Statistical Analysis are emphasized.

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