122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking
Released Saturday, 9th March 2024
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122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking
122 GAMBIT: Genomic Approximation Method for Bacterial Identification and Tracking
Saturday, 9th March 2024
Good episode? Give it some love!
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We discuss GAMBIT, software for accurately classifying bacteria and eukaryotes using a targeted k-mer based approach.
GAMBIT software: https://github.com/gambit-suite/gambitGAMBIT suite: https://github.com/gambit-suite
GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification. https://doi.org/10.1371/journal.pone.0277575
TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterizationhttps://www.frontiersin.org/journals/public-health/articles/10.3389/fpubh.2023.1198213/full
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Micro binfie podcast
Microbial Bioinformatics is a rapidly changing field marrying computer science and microbiology. Join us as we share some tips and tricks we’ve learnt over the years. If you’re student just getting to grips to the field, or someone who just wants to keep tabs on the latest and greatest - this podcast is for you. The hosts are Dr. Lee Katz from the Centres for Disease Control and Prevention (US), Dr. Nabil-Fareed Alikhan and Dr. Andrew Page both from Quadram Institute Bioscience (UK) and bring together years of experience in microbial bioinformatics.The opinions expressed here are our own and do not necessarily reflect the views of Centres for Disease Control and Prevention or Quadram Institute Bioscience.Intro music : Werq - Kevin MacLeod (incompetech.com)Licensed under Creative Commons: By Attribution 3.0 Licensehttp://creativecommons.org/licenses/by/3.0/Outro music : Scheming Weasel (faster version) - Kevin MacLeod (incompetech.com)Licensed under Creative Commons: By Attribution 3.0 Licensehttp://creativecommons.org/licenses/by/3.0/Question and comments? [email protected]Join Podchaser to...
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